working on chimeras

[mothur.git] / getseqscommand.cpp

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index 8406b813711aeb655ba786ac47eb6df16020327b..509241d87fb2207c30ce1c7db0133a2a59f357da 100644 (file)
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -285,7 +285,7 @@ void GetSeqsCommand::readGroup(){
 //alignreport file has a column header line then all other lines contain 16 columns.  we just want the first column since that contains the name
 void GetSeqsCommand::readAlign(){
        try {
-               string outputFileName = getRootName(alignfile) + "pick" +  getExtension(alignfile);;
+               string outputFileName = getRootName(getRootName(alignfile)) + "pick.align.report";
                ofstream out;
                openOutputFile(outputFileName, out);