fixes while testing 1.33.0

[mothur.git] / getsabundcommand.h

diff --git a/getsabundcommand.h b/getsabundcommand.h
index 685f039f302577505598c84f86637ec0bb06561c..7242342cdcdf455d2861f230fc65c039fd00bd6c 100644 (file)
--- a/getsabundcommand.h
+++ b/getsabundcommand.h
@@ -34,15 +34,16 @@ public:
        void help() { m->mothurOut(getHelpString()); }  
        
 private:
-       string filename, format, inputfile, listfile, rabundfile, outputDir;
+       string filename, format, inputfile, listfile, rabundfile, outputDir, countfile;
        ofstream out;
-       InputData* input;
-       SAbundVector* sabund;
        vector<string> outputNames;
 
        bool abort, allLines;
        set<string> labels; //holds labels to be used
        string label;
+    
+    int processList(ofstream& out);
+    int createRabund(CountTable& ct, ListVector*& list, RAbundVector*& rabund);
 
 };