moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / getsabundcommand.h

diff --git a/getsabundcommand.h b/getsabundcommand.h
deleted file mode 100644 (file)
index 5be00df..0000000
--- a/getsabundcommand.h
+++ /dev/null
@@ -1,47 +0,0 @@
-#ifndef GETSABUNDCOMMAND_H
-#define GETSABUNDCOMMAND_H
-
-/*
- *  getsabundcommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 6/2/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "sabundvector.hpp"
-
-class GetSAbundCommand : public Command {
-public:
-       GetSAbundCommand(string);
-       GetSAbundCommand();
-       ~GetSAbundCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "get.sabund";                          }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Get.sabund"; }
-       string getDescription()         { return "creates a sabund file"; }
-
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-private:
-       string filename, format, inputfile, listfile, rabundfile, outputDir;
-       ofstream out;
-       InputData* input;
-       SAbundVector* sabund;
-       vector<string> outputNames;
-
-       bool abort, allLines;
-       set<string> labels; //holds labels to be used
-       string label;
-
-};
-
-#endif