fixes while testing

[mothur.git] / getsabundcommand.cpp

diff --git a/getsabundcommand.cpp b/getsabundcommand.cpp
index 8ad8b4b710f0c2bba003d12f355be1dff3d5f636..3637d2903112154c6af122e1bac68a2a0ab65f1a 100644 (file)
--- a/getsabundcommand.cpp
+++ b/getsabundcommand.cpp
@@ -24,6 +24,7 @@ vector<string> GetSAbundCommand::getValidParameters(){
 //**********************************************************************************************************************
 GetSAbundCommand::GetSAbundCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["sabund"] = tempOutNames;