finished get.relabund command

[mothur.git] / getrelabundcommand.h

diff --git a/getrelabundcommand.h b/getrelabundcommand.h
index aa123a4f24e73c8b9a1dc94449e2acccbfc003cb..9725a31ab546f0829ec4ca0bf370e6792fdfeadf 100644 (file)
--- a/getrelabundcommand.h
+++ b/getrelabundcommand.h
@@ -31,12 +31,13 @@ private:
        InputData* input;
        vector<SharedRAbundVector*> lookup;
        
-       bool abort, allLines;
+       bool abort, allLines, pickedGroups;
        set<string> labels; //holds labels to be used
        string groups, label, outputDir, scale;
        vector<string> Groups;
        
-       int getRelAbundance(vector<SharedRAbundVector*>, ofstream&);
+       int getRelAbundance(vector<SharedRAbundVector*>&, ofstream&);
+       int eliminateZeroOTUS(vector<SharedRAbundVector*>& thislookup);
 
 };