moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / getrelabundcommand.h

diff --git a/getrelabundcommand.h b/getrelabundcommand.h
deleted file mode 100644 (file)
index 1d5163d..0000000
--- a/getrelabundcommand.h
+++ /dev/null
@@ -1,50 +0,0 @@
-#ifndef GETRELABUNDCOMMAND_H
-#define GETRELABUNDCOMMAND_H
-
-/*
- *  getrelabundcommand.h
- *  Mothur
- *
- *  Created by westcott on 6/21/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
- 
-#include "command.hpp"
-#include "inputdata.h"
-#include "sharedrabundvector.h"
-
-
-class GetRelAbundCommand : public Command {
-
-public:
-       GetRelAbundCommand(string);
-       GetRelAbundCommand();
-       ~GetRelAbundCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "get.relabund";                        }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Get.relabund"; }
-       string getDescription()         { return "calculates the relative abundance of each OTU in a sample"; }
-
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-private:
-       InputData* input;
-       vector<SharedRAbundVector*> lookup;
-       
-       bool abort, allLines, pickedGroups;
-       set<string> labels; //holds labels to be used
-       string groups, label, outputDir, scale, sharedfile;
-       vector<string> Groups, outputNames;
-       
-       int getRelAbundance(vector<SharedRAbundVector*>&, ofstream&);
-
-};
-
-#endif
-