added get.rabund and get.sabund command and fixed bug introduced by line by line...

[mothur.git] / getrabundcommand.h

diff --git a/getrabundcommand.h b/getrabundcommand.h
new file mode 100644 (file)
index 0000000..66a3211
--- /dev/null
+++ b/getrabundcommand.h
@@ -0,0 +1,38 @@
+#ifndef GETRABUNDCOMMAND_H
+#define GETRABUNDCOMMAND_H
+
+/*
+ *  getrabundcommand.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 6/2/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+
+#include "command.hpp"
+#include "inputdata.h"
+#include "readotu.h"
+#include "listvector.hpp"
+
+class GlobalData;
+
+class GetRAbundCommand : public Command {
+public:
+       GetRAbundCommand();
+       ~GetRAbundCommand();
+       int execute();
+       
+private:
+       GlobalData* globaldata;
+       string filename;
+       ofstream out;
+       ReadOTUFile* read;
+       InputData* input;
+       ListVector* list;
+       RAbundVector* rabund;
+};
+
+#endif
+