moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / getrabundcommand.h

diff --git a/getrabundcommand.h b/getrabundcommand.h
deleted file mode 100644 (file)
index cb9e270..0000000
--- a/getrabundcommand.h
+++ /dev/null
@@ -1,53 +0,0 @@
-#ifndef GETRABUNDCOMMAND_H
-#define GETRABUNDCOMMAND_H
-
-/*
- *  getrabundcommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 6/2/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "listvector.hpp"
-
-
-class GetRAbundCommand : public Command {
-public:
-       GetRAbundCommand(string);
-       GetRAbundCommand();
-       ~GetRAbundCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "get.rabund";                          }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Get.rabund"; }
-       string getDescription()         { return "creates a rabund file"; }
-
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-       
-private:
-       
-       string filename, listfile, sabundfile, inputfile, format, outputDir;
-       ofstream out;
-       InputData* input;
-       RAbundVector* rabund;
-       vector<string> outputNames;
-
-       bool abort, allLines, sorted;
-       set<string> labels; //holds labels to be used
-       string label;
-
-       
-};
-
-#endif
-