fixes while testing

[mothur.git] / getrabundcommand.cpp

diff --git a/getrabundcommand.cpp b/getrabundcommand.cpp
index a38aeb30dea60a2fe67984fa05dc83b6fb9130e1..60f4ece3eb13de6fc68f6141c3e28ca283da694b 100644 (file)
--- a/getrabundcommand.cpp
+++ b/getrabundcommand.cpp
@@ -24,6 +24,7 @@ vector<string> GetRAbundCommand::getValidParameters(){
 //**********************************************************************************************************************
 GetRAbundCommand::GetRAbundCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["rabund"] = tempOutNames;