added sorted parameter to get.oturep, added error checking to chimera classes in...

[mothur.git] / getoturepcommand.h

diff --git a/getoturepcommand.h b/getoturepcommand.h
index a48cbf1d7fd195264dacf9c43ee12b27867a8ff4..d92df1a4045adbabd768210a628353d9b61383b3 100644 (file)
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -23,6 +23,17 @@
 typedef list<PCell>::iterator MatData;
 typedef map<int, float> SeqMap;
 
+struct repStruct {
+               string name;
+               int     bin;
+               int size;
+               string group;
+               
+               repStruct(){}
+               repStruct(string n, int b, int s, string g) : name(n), bin(b), size(s), group(g) {}
+               ~repStruct() {}
+};
+
 class GetOTURepCommand : public Command {
 
 public:
@@ -39,7 +50,7 @@ private:
        InputData* input;
        FastaMap* fasta;
        GroupMap* groupMap;
-       string filename, fastafile, listfile, namesfile, groupfile, label;
+       string filename, fastafile, listfile, namesfile, groupfile, label, sorted;
        ofstream out;
        ifstream in, inNames;
        bool groupError;