added smart distance feature and optimized all commands using line by line processing

[mothur.git] / getoturepcommand.h

diff --git a/getoturepcommand.h b/getoturepcommand.h
index deafc78c5512edc5039a0425910aaa979eb8f639..8153c3645fc5de028a6a9812426889297991ab85 100644 (file)
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -52,7 +52,8 @@ private:
        map<string, int>::iterator it3;
        
        void readNamesFile();
-       string FindRep(int, string&); // returns name of "representative" sequence of given bin. //and fill a string containing the groups in that bin if a groupfile is given
+       int process(ListVector*);
+       string FindRep(int, string&, ListVector*); // returns name of "representative" sequence of given bin. //and fill a string containing the groups in that bin if a groupfile is given
 
 };