merged pat's trim seqs edits with sarah's major overhaul of global data; also added...

[mothur.git] / getoturepcommand.h

diff --git a/getoturepcommand.h b/getoturepcommand.h
index f413d4f51f2a9c45e3a5d17dd0243a825eb71679..37c4194a8c16e0664d7cb834b4777c054b61268d 100644 (file)
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -44,16 +44,11 @@ private:
        ofstream out;
        ifstream in, inNames;
        bool groupError;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it4;
+       
        bool abort, allLines;
        set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
        map<string, int> nameToIndex;  //maps sequence name to index in sparsematrix
-       map<int, string>::iterator it;
-       map<int, string>::iterator it2;
-       map<string, int>::iterator it3;
        
        void readNamesFile();
        int process(ListVector*);