if (countfile != "") { //if countfile is not blank then we can assume the list file contains only uniques, otherwise we assume list file contains everyone.
int numRep = 0;
if (group != "") { numRep = ct.getGroupCount(names[i], group); }
if (countfile != "") { //if countfile is not blank then we can assume the list file contains only uniques, otherwise we assume list file contains everyone.
int numRep = 0;
if (group != "") { numRep = ct.getGroupCount(names[i], group); }
if (countfile != "") { //if countfile is not blank then we can assume the list file contains only uniques, otherwise we assume list file contains everyone.
int numRep = 0;
if (group != "") { numRep = ct.getGroupCount(names[i], group); }
if (countfile != "") { //if countfile is not blank then we can assume the list file contains only uniques, otherwise we assume list file contains everyone.
int numRep = 0;
if (group != "") { numRep = ct.getGroupCount(names[i], group); }
- else { numRep = ct.getGroupCount(names[i]); }
+ else { numRep = ct.getNumSeqs(names[i]); }
for (int j = 1; j < numRep; j++) { //don't add yourself again
seqIndex.push_back(nameToIndex[names[i]]);
}
for (int j = 1; j < numRep; j++) { //don't add yourself again
seqIndex.push_back(nameToIndex[names[i]]);
}
@@ -979,6+981,7 @@ int GetOTURepCommand::process(ListVector* processList) {