This is v.1.4.0

[mothur.git] / getoturepcommand.cpp

diff --git a/getoturepcommand.cpp b/getoturepcommand.cpp
index 65c18061cec3193da3de5e4f9678aa9655ba18d9..8008079b3d2c84681d1e0c81cce7f617e66ee52e 100644 (file)
--- a/getoturepcommand.cpp
+++ b/getoturepcommand.cpp
@@ -112,7 +112,7 @@ GetOTURepCommand::GetOTURepCommand(string option){
                                        }
                                }else { cout << "error, no listvector." << endl; }
                                
-                               openInputFile(fastafile, in);
+//                             openInputFile(fastafile, in);
                                fasta = new FastaMap();
                        }
                
@@ -177,7 +177,7 @@ int GetOTURepCommand::execute(){
                int error;
                
                //read fastafile
-               fasta->readFastaFile(in);
+               fasta->readFastaFile(fastafile);
                
                in.close();