bugs fixes while testing for 1.5 release

[mothur.git] / getoturepcommand.cpp

diff --git a/getoturepcommand.cpp b/getoturepcommand.cpp
index 92ba3ad5214cee119f9dcee08c256e1b1a2f79be..4aab74080f815532ae5a0f38af09981e5fe521ec 100644 (file)
--- a/getoturepcommand.cpp
+++ b/getoturepcommand.cpp
@@ -204,7 +204,7 @@ int GetOTURepCommand::execute(){
                while((list != NULL) && ((allLines == 1) || (userLabels.size() != 0) || (userLines.size() != 0))) {
                        
                        if (allLines == 1 || lines.count(count) == 1 || labels.count(list->getLabel()) == 1){
-                                       mothurOut(list->getLabel() + "\t" + toString(list->size()) + "\t" + toString(count)); mothurOutEndLine();
+                                       mothurOut(list->getLabel() + "\t" + toString(list->size())); mothurOutEndLine();
                                        error = process(list);
                                        if (error == 1) { return 0; } //there is an error in hte input files, abort command
                                        
@@ -216,7 +216,7 @@ int GetOTURepCommand::execute(){
                        if ((anyLabelsToProcess(list->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) {
                                        delete list;
                                        list = input->getListVector(lastLabel);
-                                       mothurOut(list->getLabel() + "\t" + toString(list->size()) + "\t" + toString(count)); mothurOutEndLine();
+                                       mothurOut(list->getLabel() + "\t" + toString(list->size())); mothurOutEndLine();
                                        error = process(list);
                                        if (error == 1) { return 0; } //there is an error in hte input files, abort command
                                        
@@ -247,7 +247,7 @@ int GetOTURepCommand::execute(){
                if (needToRun == true)  {
                        delete list;
                        list = input->getListVector(lastLabel);
-                       mothurOut(list->getLabel() + "\t" + toString(list->size()) + "\t" + toString(count)); mothurOutEndLine();
+                       mothurOut(list->getLabel() + "\t" + toString(list->size())); mothurOutEndLine();
                        error = process(list);
                        delete list;
                        if (error == 1) { return 0; } //there is an error in hte input files, abort command