added multiple processors option for Windows users to align.seqs, dist.seqs, summary...

[mothur.git] / getoturepcommand.cpp

diff --git a/getoturepcommand.cpp b/getoturepcommand.cpp
index 9ed887a72ff7354c9396ba2d2c63f3b4a460afd3..378e9186a70b46f8a8c8821b77e3c213b2859990 100644 (file)
--- a/getoturepcommand.cpp
+++ b/getoturepcommand.cpp
@@ -290,7 +290,7 @@ GetOTURepCommand::GetOTURepCommand(string option)  {
                                        m->splitAtDash(groups, Groups);
                                }
                        }
-                       m->Groups = Groups;
+                       m->setGroups(Groups);
                        
                        string temp = validParameter.validFile(parameters, "large", false);             if (temp == "not found") {      temp = "F";     }
                        large = m->isTrue(temp);
@@ -429,7 +429,9 @@ int GetOTURepCommand::execute(){
                        
                        if (Groups.size() != 0) {
                                SharedUtil* util = new SharedUtil();
-                               util->setGroups(Groups, groupMap->namesOfGroups, "getoturep");
+                               vector<string> gNamesOfGroups = groupMap->getNamesOfGroups();
+                               util->setGroups(Groups, gNamesOfGroups, "getoturep");
+                               groupMap->setNamesOfGroups(gNamesOfGroups);
                                delete util;
                        }
                }