fixes while testing

[mothur.git] / getoturepcommand.cpp

diff --git a/getoturepcommand.cpp b/getoturepcommand.cpp
index 1e09dba67dc7f1d9b0b10c5a5dfa79023b04a3a6..0edaf3dda753e1b590d96f07880d8dfe970da463 100644 (file)
--- a/getoturepcommand.cpp
+++ b/getoturepcommand.cpp
@@ -38,6 +38,7 @@ inline bool compareGroup(repStruct left, repStruct right){
 //**********************************************************************************************************************
 GetOTURepCommand::GetOTURepCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;