changed int to pid_t type in fork(). roughed in get.mimarkscommand.

[mothur.git] / getmimarkspackagecommand.h

diff --git a/getmimarkspackagecommand.h b/getmimarkspackagecommand.h
new file mode 100644 (file)
index 0000000..e45dfe7
--- /dev/null
+++ b/getmimarkspackagecommand.h
@@ -0,0 +1,46 @@
+//
+//  getmimarkspackagecommand.h
+//  Mothur
+//
+//  Created by Sarah Westcott on 3/25/14.
+//  Copyright (c) 2014 Schloss Lab. All rights reserved.
+//
+
+#ifndef Mothur_getmimarkspackagecommand_h
+#define Mothur_getmimarkspackagecommand_h
+
+#include "command.hpp"
+
+/**************************************************************************************************/
+
+class GetMIMarksPackageCommand : public Command {
+public:
+    GetMIMarksPackageCommand(string);
+    GetMIMarksPackageCommand();
+    ~GetMIMarksPackageCommand(){}
+    
+    vector<string> setParameters();
+    string getCommandName()                    { return "get.mimarkspackage";                  }
+    string getCommandCategory()                { return "Sequence Processing";         }
+    
+    string getOutputPattern(string);
+       string getHelpString();
+    string getCitation() { return "http://www.mothur.org/wiki/get.mimarkspackage"; }
+    string getDescription()            { return "create blank mimarks package form for sra command"; }
+    
+    int execute();
+    void help() { m->mothurOut(getHelpString()); }
+    
+private:
+    bool abort;
+    string oligosfile, groupfile, package;
+    string outputDir;
+    vector<string> outputNames;
+};
+
+/**************************************************************************************************/
+
+
+
+
+#endif