void help() { m->mothurOut(getHelpString()); }
private:
- bool abort;
- string oligosfile, groupfile, package;
+ bool abort, requiredonly;
+ string oligosfile, groupfile, package, inputfile, file;
string outputDir;
- vector<string> outputNames;
+ vector<string> outputNames, Groups;
+
+ int readOligos();
+ int readFile();
};
/**************************************************************************************************/