~GetMetaCommunityCommand(){}
vector<string> setParameters();
- string getCommandName() { return "get.metacommunity"; }
+ string getCommandName() { return "get.communitytype"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
string getOutputPattern(string);
string getHelpString();
- string getCitation() { return "Holmes I, Harris K, Quince C (2012) Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics. PLoS ONE 7(2): e30126. doi:10.1371/journal.pone.0030126 http://www.mothur.org/wiki/Get.metacommunity"; }
+ string getCitation() { return "Holmes I, Harris K, Quince C (2012) Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics. PLoS ONE 7(2): e30126. doi:10.1371/journal.pone.0030126 http://www.mothur.org/wiki/get.communitytype"; }
string getDescription() { return "Assigns samples to bins using a Dirichlet multinomial mixture model"; }
int execute();
pDataArray->outputNames.push_back(pDataArray->matrix[i]);
findQ->printZMatrix(pDataArray->matrix[i], pDataArray->m->getGroups());
- findQ->printRelAbund(pDataArray->relabunds[i], pDataArray->m->currentBinLabels);
+ findQ->printRelAbund(pDataArray->relabunds[i], pDataArray->m->currentSharedBinLabels);
if(pDataArray->optimizegap != -1 && (numPartitions - pDataArray->minPartition) >= pDataArray->optimizegap && numPartitions >= pDataArray->minpartitions){ break; }