merged pat's trim seqs edits with sarah's major overhaul of global data; also added...

[mothur.git] / getlinecommand.h

diff --git a/getlinecommand.h b/getlinecommand.h
index 295fe9944e86dee8298e85a7f818e5656c9ee08d..68870b36fe7990d9d8da00ae2a213c08ced21e0e 100644 (file)
--- a/getlinecommand.h
+++ b/getlinecommand.h
@@ -6,12 +6,10 @@
  *  Mothur
  *
  *  Created by Thomas Ryabin on 1/30/09.
- *  Copyright 2009 __MyCompanyName__. All rights reserved.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  *
  */
 
-#include <iostream>
-#include <fstream>
 #include "command.hpp"
 #include "readmatrix.hpp"
 
@@ -19,13 +17,14 @@ class GlobalData;
 
 class GetlineCommand : public Command {
 public:
-       GetlineCommand();
+       GetlineCommand(string);
        ~GetlineCommand();
        int execute();
+       void help();
        
 private:
        GlobalData* globaldata;
-       string filename;
+       bool abort;
 };
 
 #endif