merged pat's trim seqs edits with sarah's major overhaul of global data; also added...

[mothur.git] / getlinecommand.cpp

diff --git a/getlinecommand.cpp b/getlinecommand.cpp
index 5f459bf7e6a8013ee61893502c01e5c6a306c4b1..6802978a0c3e527aed6a30a7a8ecce1726c19b57 100644 (file)
--- a/getlinecommand.cpp
+++ b/getlinecommand.cpp
@@ -67,9 +67,8 @@ int GetlineCommand::execute(){
        
                if (abort == true) { return 0; }
        
-               filename = globaldata->inputFileName;
                ifstream in;
-               openInputFile(filename, in);
+               openInputFile(globaldata->inputFileName, in);
                string label;
                int numBins = 0;
                int count = -1;