added count file to trim.seqs, get.groups, get.lineage, get.seqs, heatmap.sim, list...

[mothur.git] / getlineagecommand.h

diff --git a/getlineagecommand.h b/getlineagecommand.h
index 0ab042bac365b64840e32212a6705f62d46d5ff1..99bc0fa347313bb023e8bd1b41a5c3e2be5c93ed 100644 (file)
--- a/getlineagecommand.h
+++ b/getlineagecommand.h
@@ -36,11 +36,12 @@ class GetLineageCommand : public Command {
        private:
                set<string> names;
                vector<string> outputNames, listOfTaxons;
-               string fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir, taxons;
+               string fastafile, namefile, groupfile, alignfile, countfile, listfile, taxfile, outputDir, taxons;
                bool abort, dups;
                
                int readFasta();
                int readName();
+        int readCount();
                int readGroup();
                int readAlign();
                int readList();