added load.logfile command. changed summary.single output for subsample=t.

[mothur.git] / getlineagecommand.h

diff --git a/getlineagecommand.h b/getlineagecommand.h
index 4c9514d2226028f54d6996070d3776d66aab6122..0ab042bac365b64840e32212a6705f62d46d5ff1 100644 (file)
--- a/getlineagecommand.h
+++ b/getlineagecommand.h
@@ -23,7 +23,8 @@ class GetLineageCommand : public Command {
                vector<string> setParameters();
                string getCommandName()                 { return "get.lineage";                         }
                string getCommandCategory()             { return "Phylotype Analysis";          }
-               string getHelpString(); 
+               string getOutputFileNameTag(string, string);
+       string getHelpString(); 
                string getCitation() { return "http://www.mothur.org/wiki/Get.lineage"; }
                string getDescription()         { return "gets sequences from a list, fasta, name, group, alignreport or taxonomy file from a given taxonomy or set of taxonomies"; }
 
@@ -44,7 +45,6 @@ class GetLineageCommand : public Command {
                int readAlign();
                int readList();
                int readTax();  
-               string removeConfidences(string);
                vector< map<string, float> > getTaxons(string);
 };