added modify names parameter to set.dir

[mothur.git] / getlabelcommand.h

diff --git a/getlabelcommand.h b/getlabelcommand.h
index ae4c4db2409cfd96d8e044531605d5176329f3ff..26ec6550b4f6b7fb622b60c1b711fc24c0c4ac40 100644 (file)
--- a/getlabelcommand.h
+++ b/getlabelcommand.h
@@ -6,26 +6,38 @@
  *  Mothur
  *
  *  Created by Thomas Ryabin on 1/30/09.
- *  Copyright 2009 __MyCompanyName__. All rights reserved.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  *
  */
 
-#include <iostream>
-#include <fstream>
 #include "command.hpp"
-#include "readmatrix.hpp"
+#include "ordervector.hpp"
+#include "inputdata.h"
 
-class GlobalData;
 
 class GetlabelCommand : public Command {
 public:
+       GetlabelCommand(string);
        GetlabelCommand();
-       ~GetlabelCommand();
-       int execute();
+       ~GetlabelCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "get.label";                           }
+       string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getHelpString(); 
+    string getOutputPattern(string) { return ""; }     
+       string getCitation() { return "http://www.mothur.org/wiki/Get.label"; }
+       string getDescription()         { return "outputs labels"; }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
        
 private:
-       GlobalData* globaldata;
-       string filename;
+       string inputfile, listfile, rabundfile, sabundfile, format;
+       bool abort;
+       vector<string> outputNames;
 };
 
-#endif
\ No newline at end of file
+#endif