added set.current and get.current commands and modified existing commands to update...

[mothur.git] / getcurrentcommand.h

diff --git a/getcurrentcommand.h b/getcurrentcommand.h
new file mode 100644 (file)
index 0000000..c36b6a5
--- /dev/null
+++ b/getcurrentcommand.h
@@ -0,0 +1,40 @@
+#ifndef GETCURRENTCOMMAND_H
+#define GETCURRENTCOMMAND_H
+
+/*
+ *  getcurrentcommand.h
+ *  Mothur
+ *
+ *  Created by westcott on 3/16/11.
+ *  Copyright 2011 Schloss Lab. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+
+class GetCurrentCommand : public Command {
+
+       public:
+               GetCurrentCommand(string);
+               GetCurrentCommand();
+               ~GetCurrentCommand();
+               vector<string> getRequiredParameters();
+               vector<string> getValidParameters();
+               vector<string> getRequiredFiles();
+               map<string, vector<string> > getOutputFiles() { return outputTypes; }
+               int execute();
+               void help();
+               
+       private:
+               
+               vector<string> outputNames;
+               map<string, vector<string> > outputTypes;
+               bool abort;
+       
+               string clearTypes;
+               vector<string> types;
+               
+};
+
+#endif
+