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[mothur.git] / getcommandinfocommand.cpp

diff --git a/getcommandinfocommand.cpp b/getcommandinfocommand.cpp
index 283cd405eed10282df0ded886c616cb003b7847a..52559b3c064f6437affcbdc5dcd3d0b174089b42 100644 (file)
--- a/getcommandinfocommand.cpp
+++ b/getcommandinfocommand.cpp
@@ -113,6 +113,14 @@ int GetCommandInfoCommand::execute(){
                                }
                                out << "help=" << newHelpString << endl;
                                
+                               //remove /n from citation string since gui reads line by line
+                               string mycitationString = thisCommand->getCitation();
+                               string newCitationString = "";
+                               for (int i = 0; i < mycitationString.length(); i++) { 
+                                       if (mycitationString[i] != '\n') { newCitationString += mycitationString[i]; }
+                               }
+                               out << "citation=" << newCitationString << endl;
+                               
                                //outputTypes - makes something like outputTypes=fasta-name-qfile
                                map<string, vector<string> > thisOutputTypes = thisCommand->getOutputFiles();
                                map<string, vector<string> >::iterator itTypes;