changing command name classify.shared to classifyrf.shared

[mothur.git] / fullmatrix.h

diff --git a/fullmatrix.h b/fullmatrix.h
index e2c0e31b5fa8e4ed81ced8ba88b61fc4620adbf3..9de7ead566d4d5446b5ea405b5e3c7eb24991cc0 100644 (file)
--- a/fullmatrix.h
+++ b/fullmatrix.h
@@ -11,7 +11,6 @@
 
 #include "mothur.h"
 #include "groupmap.h"
-#include "globaldata.hpp"
 #include "progress.hpp"
 
 
@@ -23,8 +22,8 @@ struct Names {
 class FullMatrix {
        
 public:
-       FullMatrix(){ m = MothurOut::getInstance(); }
-       FullMatrix(ifstream&);
+       //FullMatrix(){ m = MothurOut::getInstance(); }
+       FullMatrix(ifstream&, GroupMap*, bool);
        ~FullMatrix(){};
        
        int getNumSeqs();
@@ -52,7 +51,7 @@ private:
        int numSeqs;
        int numGroups;
        int numUserGroups;
-       GlobalData* globaldata;
+       bool sim;
        MothurOut* m;
 };