some changes to trim.flows

[mothur.git] / flowdata.cpp

diff --git a/flowdata.cpp b/flowdata.cpp
index 39c1f8317a306c1a49488625725cbea7a4c6bd4e..d1769bbed46e34c12a1a8ad4a1f69bebaeca071d 100644 (file)
--- a/flowdata.cpp
+++ b/flowdata.cpp
@@ -19,14 +19,14 @@ FlowData::~FlowData(){      /*      do nothing      */      }
 
 //**********************************************************************************************************************
 
-FlowData::FlowData(int numFlows, float signal, float noise, int maxHomoP) : 
-                       numFlows(numFlows), signalIntensity(signal), noiseIntensity(noise), maxHomoP(maxHomoP){
+FlowData::FlowData(int numFlows, float signal, float noise, int maxHomoP, string baseFlow) : 
+                       numFlows(numFlows), signalIntensity(signal), noiseIntensity(noise), maxHomoP(maxHomoP), baseFlow(baseFlow){
 
        try {
                m = MothurOut::getInstance();
 
                flowData.assign(numFlows, 0);
-               baseFlow = "TACG";
+//             baseFlow = "TACG";
                seqName = "";
                locationString = "";
        }
@@ -219,7 +219,7 @@ string FlowData::getName(){
                return seqName;
        }
        catch(exception& e) {
-               m->errorOut(e, "FlowData", "getSequence");
+               m->errorOut(e, "FlowData", "getName");
                exit(1);
        }
 }