working on pam

[mothur.git] / filtersharedcommand.h

diff --git a/filtersharedcommand.h b/filtersharedcommand.h
index f97cbf94b374818da1089b9aa4fc596f1603b6d6..704655134c0bb548c66d70e8fb94336bb31c130c 100644 (file)
--- a/filtersharedcommand.h
+++ b/filtersharedcommand.h
@@ -34,12 +34,12 @@ public:
        void help() { m->mothurOut(getHelpString()); }  
        
 private:       
-       bool abort, pickedGroups, allLines, makeRare;
+       bool abort, pickedGroups, allLines, makeRare, keepties;
        set<string> labels; //holds labels to be used
        string groups, label, outputDir, sharedfile;
        vector<string> Groups, outputNames;
-       int minAbund, minTotal;
-    float minPercent;
+       int minAbund, minTotal, minSamples;
+    float minPercent, minPercentSamples, rarePercent;
     
     int processShared(vector<SharedRAbundVector*>&);