added command descriptions

[mothur.git] / filterseqscommand.h

diff --git a/filterseqscommand.h b/filterseqscommand.h
index cb02732d1ede7c7a70ec5a518426bca18a0019bf..e445023df07f7c0c6e3bcc6c4d0e95c574e6174d 100644 (file)
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -18,9 +18,18 @@ class FilterSeqsCommand : public Command {
 \r
 public:\r
        FilterSeqsCommand(string);\r
+       FilterSeqsCommand();\r
        ~FilterSeqsCommand() {};\r
-       int execute();  \r
-       void help();\r
+       \r
+       vector<string> setParameters();\r
+       string getCommandName()                 { return "filter.seqs";                 }\r
+       string getCommandCategory()             { return "Sequence Processing"; }\r
+       string getHelpString(); \r
+       string getCitation() { return "http://www.mothur.org/wiki/Filter.seqs"; }\r
+       string getDescription()         { return "removes columns from alignments based on a criteria defined by the user"; }\r
+       \r
+       int execute(); \r
+       void help() { m->mothurOut(getHelpString()); }  \r
        \r
 private:\r
        struct linePair {\r