merged pat's trim seqs edits with sarah's major overhaul of global data; also added...

[mothur.git] / filterseqscommand.h

diff --git a/filterseqscommand.h b/filterseqscommand.h
index 3f1e4c46d349d9da15837466502bd06a2f243883..cfa56b39df6a4001014e1bc42048bed50bede8fa 100644 (file)
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -11,9 +11,8 @@
  */
 
 #include "command.hpp"
-#include "globaldata.hpp"
-#include "sequence.hpp"
 
+class Sequence;
 class FilterSeqsCommand : public Command {
 
 public:
@@ -35,11 +34,7 @@ private:
        bool abort;
        float soft;
        int numSeqs;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
        
-       GlobalData* globaldata; 
        vector<int> a, t, g, c, gap;
 
 };