changed how we break up the files on parallelized commands to avoid scanning file.

[mothur.git] / filterseqscommand.h

diff --git a/filterseqscommand.h b/filterseqscommand.h
index e068405816e3d8c0bc1e21b2fb8316f779009526..cb02732d1ede7c7a70ec5a518426bca18a0019bf 100644 (file)
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -25,9 +25,10 @@ public:
 private:\r
        struct linePair {\r
                unsigned long int start;\r
-               int num;\r
-               linePair(unsigned long int i, long int j) : start(i), num(j) {}\r
+               unsigned long int end;\r
+               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}\r
        };\r
+\r
        vector<linePair*> lines;\r
        vector<int> processIDS;\r
 \r
@@ -52,8 +53,6 @@ private:
        int driverMPIRun(int, int, MPI_File&, MPI_File&, vector<unsigned long int>&);\r
        int MPICreateFilter(int, int, Filters&, MPI_File&, vector<unsigned long int>&); \r
        #endif\r
-       int setLines(string);\r
-       \r
        \r
 };\r
 \r