sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / filterseqscommand.h

diff --git a/filterseqscommand.h b/filterseqscommand.h
index fc6bcb2efab1b3885af316a160faa59446600f30..90c13f8ee82722570d129d74874b519cc4ee9a60 100644 (file)
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -153,7 +153,7 @@ static DWORD WINAPI MyCreateFilterThreadFunction(LPVOID lpParam){
                        in.seekg(pDataArray->start-1); pDataArray->m->gobble(in); \r
                }\r
                \r
-               pDataArray->count = pDataArray->end;\r
+               pDataArray->count = 0;\r
                for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process\r
                        \r
                        if (pDataArray->m->control_pressed) { in.close(); pDataArray->count = 1; return 1; }\r
@@ -166,7 +166,7 @@ static DWORD WINAPI MyCreateFilterThreadFunction(LPVOID lpParam){
                 if(pDataArray->trump != '*')                   {       pDataArray->F.doTrump(current);         }\r
                 if(pDataArray->m->isTrue(pDataArray->vertical) || pDataArray->soft != 0)       {       pDataArray->F.getFreqs(current);        }\r
                        }\r
-            \r
+            pDataArray->count++;\r
             //report progress\r
                        if((i) % 100 == 0){     pDataArray->m->mothurOut(toString(i)); pDataArray->m->mothurOutEndLine();               }\r
                }\r
@@ -203,7 +203,7 @@ static DWORD WINAPI MyRunFilterThreadFunction(LPVOID lpParam){
                        in.seekg(pDataArray->start-1); pDataArray->m->gobble(in); \r
                }\r
                \r
-               pDataArray->count = pDataArray->end;\r
+               pDataArray->count = 0;\r
                for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process\r
                        \r
                        if (pDataArray->m->control_pressed) { in.close(); out.close(); pDataArray->count = 1; return 1; }\r
@@ -221,7 +221,7 @@ static DWORD WINAPI MyRunFilterThreadFunction(LPVOID lpParam){
                 \r
                 out << '>' << seq.getName() << endl << filterSeq << endl;\r
             }\r
-            \r
+            pDataArray->count++;\r
             //report progress\r
                        if((i) % 100 == 0){     pDataArray->m->mothurOut(toString(i)); pDataArray->m->mothurOutEndLine();               }\r
                }\r