testing mpi

[mothur.git] / filterseqscommand.h

diff --git a/filterseqscommand.h b/filterseqscommand.h
index 232b0acb9966c19d0dafe9a3875dbc702e925754..3cc007c059c63de5f28eee57ac0afcf78d00dc33 100644 (file)
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -35,6 +35,7 @@ private:
        string vertical, filter, fasta, hard, outputDir, filterFileName;
        vector<string> fastafileNames;  
        int alignmentLength, processors;
+       vector<int> bufferSizes;
 
        char trump;
        bool abort;
@@ -44,6 +45,10 @@ private:
        string createFilter();
        int createProcessesCreateFilter(Filters&, string);
        int driverCreateFilter(Filters&, string, linePair*);
+       int MPICreateFilter(Filters&, string);  
+       int setLines(string);
+       int parseBuffer(string, vector<string>&);
+       
 };
 
 #endif