numSeqs passing fix

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index f3b543c7636af24e333dcf301d897fa86beb9746..e91d32b1e781ec580900ea5053425950d220f090 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -527,7 +527,7 @@ int FilterSeqsCommand::createProcessesRunFilter(string F, string filename) {
                                
                                //pass numSeqs to parent
                                ofstream out;
-                               string tempFile = toString(getpid()) + ".temp";
+                               string tempFile = filename +  toString(getpid()) + ".num.temp";
                                openOutputFile(tempFile, out);
                                out << num << endl;
                                out.close();
@@ -544,7 +544,7 @@ int FilterSeqsCommand::createProcessesRunFilter(string F, string filename) {
                                        
                for (int i = 0; i < processIDS.size(); i++) {
                        ifstream in;
-                       string tempFile =  toString(processIDS[i]) + ".temp";
+                       string tempFile =  filename + toString(processIDS[i]) + ".num.temp";
                        openInputFile(tempFile, in);
                        if (!in.eof()) { int tempNum = 0; in >> tempNum; num += tempNum; }
                        in.close(); remove(tempFile.c_str());
@@ -881,7 +881,7 @@ int FilterSeqsCommand::createProcessesCreateFilter(Filters& F, string filename)
                                for (int k = 0; k < alignmentLength; k++) {             out << F.c[k] << '\t'; }  out << endl;
                                for (int k = 0; k < alignmentLength; k++) {             out << F.gap[k] << '\t'; }  out << endl;
 
-                               cout << F.getFilter() << endl;
+                               //cout << F.getFilter() << endl;
                                out.close();
                                
                                exit(0);