changed sffinfo flow default to true. fixed bug in trim.seqs and filter.seqs related...

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 806ca0d69cabd6056de8ce1870c628e40916e080..9096bb671c830a7f5b0b3638ef0ef0a1d0a5f65d 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -420,7 +420,19 @@ int FilterSeqsCommand::filterSequences() {
                                MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case
                                
 #else
-                       vector<unsigned long long> positions = savedPositions[s];
+            
+            vector<unsigned long long> positions;
+            if (savedPositions.size() != 0) { positions = savedPositions[s]; }
+            else {
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+                               positions = m->divideFile(fastafileNames[s], processors);
+#else
+                if(processors != 1){
+                    int numFastaSeqs = 0;
+                    positions = m->setFilePosFasta(fastafileNames[s], numFastaSeqs); 
+                }
+#endif
+            }
                #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
                        //vector<unsigned long long> positions = m->divideFile(fastafileNames[s], processors);