fixed some bugs

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 8864bb3c57d32052220013ebf88267f865ccdbd1..7330268a83ccd9b044f38fa28f58386132562e2d 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -118,7 +118,6 @@ void FilterSeqsCommand::doSoft() {
 
 int FilterSeqsCommand::execute() {     
        try {
-               
                ifstream inFASTA;
                openInputFile(globaldata->getFastaFile(), inFASTA);
                
@@ -130,14 +129,8 @@ int FilterSeqsCommand::execute() {
                
                if(globaldata->getHard().compare("") != 0)      {       doHard();               }       //      has to be applied first!
                if(globaldata->getTrump().compare("") != 0)     {       doTrump();              }
-               if(isTrue(globaldata->getVertical()))           {       doVertical();   }
+               if(isTrue(globaldata->getVertical()) == true)           {       doVertical();   }
                if(globaldata->getSoft().compare("") != 0)      {       doSoft();               }
-
-               
-               
-               
-               
-               
                
                ofstream outfile;
                string filterFile = getRootName(globaldata->inputFileName) + "filter";