changed groupfile in classify.seqs to reflect multiple fasta files

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 28e137376c51261498a4d616ae929ba33b1ff3be..41c321933754ebb0a86dc279985a31711b31f629 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -339,6 +339,8 @@ int FilterSeqsCommand::filterSequences() {
                                        
                                        lines.push_back(new linePair(0, numFastaSeqs));
                                        
+                                       numSeqs += numFastaSeqs;
+                                       
                                        driverRunFilter(filter, filteredFasta, fastafileNames[s], lines[0]);
                                }else{
                                        setLines(fastafileNames[s]);
@@ -362,6 +364,8 @@ int FilterSeqsCommand::filterSequences() {
                                        
                                lines.push_back(new linePair(0, numFastaSeqs));
                                
+                               numSeqs += numFastaSeqs;
+                               
                                driverRunFilter(filter, filteredFasta, fastafileNames[s], lines[0]);
 
                                if (m->control_pressed) {  return 1; }