filter.seqs bug change

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index e91d32b1e781ec580900ea5053425950d220f090..2c61465449410bd3ec974924f1f0ce2e97739835 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -866,6 +866,13 @@ int FilterSeqsCommand::createProcessesCreateFilter(Filters& F, string filename)
                                processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
                                process++;
                        }else if (pid == 0){
+                               //reset child's filter counts to 0;
+                               F.a.clear(); F.a.resize(alignmentLength, 0);
+                               F.t.clear(); F.t.resize(alignmentLength, 0);
+                               F.g.clear(); F.g.resize(alignmentLength, 0);
+                               F.c.clear(); F.c.resize(alignmentLength, 0);
+                               F.gap.clear(); F.gap.resize(alignmentLength, 0);
+                               
                                num = driverCreateFilter(F, filename, lines[process]);
                                
                                //write out filter counts to file