added shannonrange calc.

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 8b68988884acb408d0e72c5c3fa407a7b9f241b6..4ac3381d384edf1979f78c911381e040666b8afe 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -990,7 +990,8 @@ int FilterSeqsCommand::driverCreateFilter(Filters& F, string filename, linePair*
                                        
                        Sequence seq(in); m->gobble(in);
                        if (seq.getName() != "") {
-                                       if (seq.getAligned().length() != alignmentLength) { m->mothurOut("Sequences are not all the same length, please correct."); m->mothurOutEndLine(); m->control_pressed = true;  }
+                    if (m->debug) { m->mothurOut("[DEBUG]: " + seq.getName() + " length = " + toString(seq.getAligned().length())); m->mothurOutEndLine();}
+                                       if (seq.getAligned().length() != alignmentLength) { m->mothurOut("[ERROR]: Sequences are not all the same length, please correct."); m->mothurOutEndLine(); m->control_pressed = true;  }
                                        
                                        if(trump != '*')                        {       F.doTrump(seq);         }
                                        if(m->isTrue(vertical) || soft != 0)    {       F.getFreqs(seq);        }