added mothurgetpid function. fixed bug with align.seqs related to g++ 4.8 change...

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 4ac3381d384edf1979f78c911381e040666b8afe..031ac0ecf5f6d5fcc6d8449fd8b35a90a95aba85 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -659,12 +659,12 @@ int FilterSeqsCommand::createProcessesRunFilter(string F, string filename, strin
                                processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
                                process++;
                        }else if (pid == 0){
-                               string filteredFasta = filename + toString(getpid()) + ".temp";
+                               string filteredFasta = filename + m->mothurGetpid(process) + ".temp";
                                num = driverRunFilter(F, filteredFasta, filename, lines[process]);
                                
                                //pass numSeqs to parent
                                ofstream out;
-                               string tempFile = filename +  toString(getpid()) + ".num.temp";
+                               string tempFile = filename +  m->mothurGetpid(process) + ".num.temp";
                                m->openOutputFile(tempFile, out);
                                out << num << endl;
                                out.close();
@@ -1095,7 +1095,7 @@ int FilterSeqsCommand::createProcessesCreateFilter(Filters& F, string filename)
                                num = driverCreateFilter(F, filename, lines[process]);
                                
                                //write out filter counts to file
-                               filename += toString(getpid()) + "filterValues.temp";
+                               filename += m->mothurGetpid(process) + "filterValues.temp";
                                ofstream out;
                                m->openOutputFile(filename, out);