fixed filterseqscommand bug where trump wasn't being used

[mothur.git] / filters.h

diff --git a/filters.h b/filters.h
index 94f8d33c0329793f3e1c39c0ea0c467f53493357..13607e78045a35a9a3ac00c675ba6c0b46995f42 100644 (file)
--- a/filters.h
+++ b/filters.h
@@ -46,6 +46,14 @@ public:
                        if(a[i] < threshold && t[i] < threshold && g[i] < threshold && c[i] < threshold){       filter[i] = 0;  }
                }
        }
+
+       void mergeFilter(string newFilter){
+               for(int i=0;i<alignmentLength;i++){
+                       if(newFilter[i] == '0'){
+                               filter[i] = 0;
+                       }
+               }
+       }
        
        void doVertical() {