fixed some bugs found while testing 1.8

[mothur.git] / fileoutput.h

diff --git a/fileoutput.h b/fileoutput.h
index 0c7999d2c901cc3c3c28357837e467dabb4a990a..17bd7a1d7d23dd6a86ae2ea2ec5e5c16e9665171 100644 (file)
--- a/fileoutput.h
+++ b/fileoutput.h
@@ -28,7 +28,7 @@ protected:
 class ThreeColumnFile : public FileOutput {
        
 public:
-       ThreeColumnFile(string n) : FileOutput(), inName(n), counter(0), outName(getPathName(n) + ".temp") { };
+       ThreeColumnFile(string n) : FileOutput(), inName(n), counter(0), outName(n + ".temp") { };
        ~ThreeColumnFile();
        void initFile(string);
        void output(int, vector<double>);
@@ -52,7 +52,7 @@ class OneColumnFile : public FileOutput {
        
        
 public:
-       OneColumnFile(string n) : inName(n), counter(0), outName(getPathName(n) + ".temp") {};
+       OneColumnFile(string n) : inName(n), counter(0), outName(n + ".temp") {};
        ~OneColumnFile();
        void output(int, vector<double>);
        void initFile(string);
@@ -76,7 +76,7 @@ class SharedOneColumnFile : public FileOutput {
        
        
 public:
-       SharedOneColumnFile(string n) : inName(n), counter(0), outName(getPathName(n) + ".temp") {};
+       SharedOneColumnFile(string n) : inName(n), counter(0), outName(n + ".temp") {};
        ~SharedOneColumnFile();
        void output(int, vector<double>);
        void initFile(string);
@@ -101,7 +101,7 @@ private:
 class SharedThreeColumnFile : public FileOutput {
        
 public:
-       SharedThreeColumnFile(string n, string groups) : FileOutput(), groupLabel(groups), inName(n), counter(0), numGroup(1), outName(getPathName(n) + ".temp") {      };
+       SharedThreeColumnFile(string n, string groups) : FileOutput(), groupLabel(groups), inName(n), counter(0), numGroup(1), outName(n + ".temp") {   };
        ~SharedThreeColumnFile();
        void initFile(string);
        void output(int, vector<double>);
@@ -125,7 +125,7 @@ private:
 class ColumnFile : public FileOutput {
        
 public:
-       ColumnFile(string n, string i) : FileOutput(), iters(i), inName(n), counter(0), outName(getPathName(n) + ".temp") {};
+       ColumnFile(string n, string i) : FileOutput(), iters(i), inName(n), counter(0), outName(n + ".temp") {};
        ~ColumnFile();
        
        //to make compatible with parent class