broke up globaldata and moved error checking and help into commands

[mothur.git] / fileoutput.cpp

diff --git a/fileoutput.cpp b/fileoutput.cpp
index d4db5464f162a36d9badb3da83390ed69ece7066..4347c127f844fd4132f97c361ffcc4b0cd0919ea 100644 (file)
--- a/fileoutput.cpp
+++ b/fileoutput.cpp
@@ -160,14 +160,14 @@ void ColumnFile::output(vector<double> data){
                        string inputBuffer;
                        getline(inFile, inputBuffer);
 
-                       outFile << inputBuffer << '\t' << setprecision(6) << data[0] << setprecision(globaldata->getIters().length());
+                       outFile << inputBuffer << '\t' << setprecision(6) << data[0] << setprecision(iters.length());
                        for (int i = 1; i< data.size(); i++) {
                                outFile << '\t' << data[i]; 
                        }
                        outFile << endl;
                }
                else{
-                       outFile << setprecision(6) << data[0] << setprecision(globaldata->getIters().length());
+                       outFile << setprecision(6) << data[0] << setprecision(iters.length());
                        for (int i = 1; i< data.size(); i++) {
                                outFile << '\t' << data[i]; 
                        }