changes while testing

[mothur.git] / fastamap.h

diff --git a/fastamap.h b/fastamap.h
index e628aedbc460af82c19fd1b124dec5235b421c2e..e1ff3dff2f9ceab1c663f0646141594fe1d20339 100644 (file)
--- a/fastamap.h
+++ b/fastamap.h
@@ -11,6 +11,7 @@
  */
  
 #include "mothur.h"
+#include "mothurout.h"
 
 
 /* This class represents the fasta file.  It reads a fasta file a populates the internal data structure "data".
@@ -21,7 +22,7 @@ a list of the sequences names who have the same sequence and a number of how man
 class FastaMap  {
 
 public:
-       FastaMap() {};
+       FastaMap() { m = MothurOut::getInstance(); }
        ~FastaMap() {};
        
        string getGroupName(string);  //pass a sequence name get its group
@@ -42,6 +43,7 @@ private:
 
        map<string, group>  data;  //sequence, groupinfo        - condensed representation of file
        map<string, string>  seqmap;  //name, sequence  -  uncondensed representation of file
+       MothurOut* m;
 };
 
 #endif