public:
FastaMap() {};
- FastaMap(ifstream&);
~FastaMap() {};
string getGroupName(string); //pass a sequence name get its group
int getGroupNumber(string); //pass a sequence name get number of sequence in its group
string getNames(string); //pass a sequence get the string of names in the group separated by ','s.
void push_back(string, string); //sequencename, groupname
+ void set(string, string, string); //sequencename, groupname, groupnumber, names.
void clear();
int size(); //returns number of unique sequences
void print(ostream&);
+ void readFastaFile(ifstream&);
private:
struct group {
string groupname; //the group name for identical sequences, will be set to the first sequence found.
- int groupnumber; //the number of sequences in that group.
+ int groupnumber; //the number of sequence names with the same sequence.
string names; //the names of the sequence separated by ','.
};
- map<string, group> data; //sequence, group
- map<string, group>::iterator it;
+ map<string, group> data; //sequence, groupinfo
+ map<string, group>::iterator it;
};
#endif
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