added logfile feature

[mothur.git] / fastamap.cpp

diff --git a/fastamap.cpp b/fastamap.cpp
index 9b2438f4e18986f7fc362c71f77c3e71caa448a3..57754667da593265618aa0d9e5c046e18b2b7203 100644 (file)
--- a/fastamap.cpp
+++ b/fastamap.cpp
@@ -43,11 +43,7 @@ void FastaMap::readFastaFile(string inFileName) {
                in.close();             
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the FastaMap class Function readFastaFile. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       catch(...) {
-               cout << "An unknown error has occurred in the FastaMap class function readFastaFile. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "FastaMap", "readFastaFile");
                exit(1);
        }
 }
@@ -152,11 +148,7 @@ void FastaMap::printNamesFile(string outFileName){ //prints data
                outFile.close();
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the FastaMap class Function print. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       catch(...) {
-               cout << "An unknown error has occurred in the FastaMap class function print. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "FastaMap", "printNamesFile");
                exit(1);
        }
 }
@@ -175,11 +167,7 @@ void FastaMap::printCondensedFasta(string outFileName){ //prints data
                out.close();
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the FastaMap class Function print. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       catch(...) {
-               cout << "An unknown error has occurred in the FastaMap class function print. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "FastaMap", "printCondensedFasta");
                exit(1);
        }
 }