moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / fasta.h

diff --git a/fasta.h b/fasta.h
deleted file mode 100644 (file)
index 8b9e3d6..0000000
--- a/fasta.h
+++ /dev/null
@@ -1,97 +0,0 @@
-/*
- * fasta.h
- *
- * $Id$
- *
- *****************************************************************************
- *
- * Copyright (c) 2004,  Luke Sheneman
- * All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without 
- * modification, are permitted provided that the following conditions 
- * are met:
- * 
- *  + Redistributions of source code must retain the above copyright 
- *    notice, this list of conditions and the following disclaimer. 
- *  + Redistributions in binary form must reproduce the above copyright 
- *    notice, this list of conditions and the following disclaimer in 
- *    the documentation and/or other materials provided with the 
- *    distribution. 
- *  + The names of its contributors may not be used to endorse or promote 
- *    products derived  from this software without specific prior 
- *    written permission. 
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
- * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE 
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
- * POSSIBILITY OF SUCH DAMAGE.  
- *
- *****************************************************************************
- *
- * AUTHOR:
- * 
- *   Luke Sheneman
- *   sheneman@cs.uidaho.edu
- *
- */
-
-
-#ifndef _INC_NJ_FASTA_H_
-#define _INC_NJ_FASTA_H_ 1
-
-#ifdef __cplusplus
-extern "C" {
-#endif
-
-#include "clearcut.h"
-
-#define NJ_INITIAL_BUFFER_SIZE   512
-#define NJ_INITIAL_NSEQS         64
-
-#define NJ_FASTA_MODE_TITLE      100
-#define NJ_FASTA_MODE_SEQUENCE   101
-#define NJ_FASTA_MODE_NEWLINE    102
-#define NJ_FASTA_MODE_UNKNOWN    103
-
-
-typedef struct _STRUCT_NJ_ALIGNMENT {
-
-  long int nseq;
-  long int length;
-  
-  char **titles;
-  
-  char *data;
-
-} NJ_alignment;
-
-
-NJ_alignment *
-NJ_read_fasta(NJ_ARGS *nj_args);
-
-void
-NJ_print_alignment(NJ_alignment *alignment);
-
-void
-NJ_free_alignment(NJ_alignment *alignment);
-
-int
-NJ_taxaname_unique(NJ_alignment *alignment);
-
-#ifdef __cplusplus
-}
-#endif
-
-#endif /* _INC_NJ_FASTA_H_ */
-
-
-
-