added alignment code

[mothur.git] / errorchecking.h

diff --git a/errorchecking.h b/errorchecking.h
index 8de923499a5f84d520063d337c4be688a57d21ad..d6388f7d2337bacafd148a201cc62a27f83e1375 100644 (file)
--- a/errorchecking.h
+++ b/errorchecking.h
@@ -36,7 +36,7 @@ class ErrorCheck {
                void refresh();
                string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, nexusfile, clustalfile, treefile, sharedfile, cutoff, format; 
                string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale, ends, processors;
-
+               string templatefile, search, ksize, align, match, mismatch, gapopen, gapextend;
                string commandName, optionText;
                bool errorFree;